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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="review-article" dtd-version="1.1d1">
  <front>
    <journal-meta>
      <journal-title-group>
        <journal-title>Biomedical Research and Therapy</journal-title>
      </journal-title-group>
      <issn pub-type="epub" publication-format="electronic">2198-4093</issn>
      <publisher>
        <publisher-name>BioMedPress</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.15419/bmrat.v4i10.374</article-id>
      <article-categories>
        <subj-group subj-group-type="display-channel">
          <subject>Review</subject>
        </subj-group>
        <subj-group subj-group-type="heading">
          <subject>Biomedical Research and Therapy</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>The prevalence of KRAS mutation in colorectal cancer patients in Iranian population: A systematic review and meta-analysis study</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <name>
            <surname>Payandeh</surname>
            <given-names>Mehrdad</given-names>
          </name>
          <xref ref-type="aff" rid="aff1"/>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Amirifard</surname>
            <given-names>Nasrin</given-names>
          </name>
          <xref ref-type="aff" rid="aff2"/>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Sadeghi</surname>
            <given-names>Masoud</given-names>
          </name>
          <xref ref-type="aff" rid="aff3"/>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Shazad</surname>
            <given-names>Babak</given-names>
          </name>
          <xref ref-type="aff" rid="aff4"/>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Farshchian</surname>
            <given-names>Negin</given-names>
          </name>
          <xref ref-type="aff" rid="aff2"/>
        </contrib>
        <contrib contrib-type="author" corresp="yes">
          <name>
            <surname>Sadeghi</surname>
            <given-names>Edris</given-names>
          </name>
          <xref ref-type="aff" rid="aff1"/>
          <xref ref-type="aff" rid="aff5"/>
          <xref ref-type="corresp" rid="cor1">*</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Dayani</surname>
            <given-names>Malihe</given-names>
          </name>
          <xref ref-type="aff" rid="aff2"/>
        </contrib>
        <aff id="aff1">
          <institution>Department of Bone Marrow Transplantation, Imam Reza Hospital, Kermanshah University of Medical Sciences, Kermanshah, Iran</institution>
        </aff>
        <aff id="aff2">
          <institution>Department of Radiation Oncology, Imam Reza Hospital, Kermanshah University of Medical Sciences, Kermanshah, Iran</institution>
        </aff>
        <aff id="aff3">
          <institution>Medical Biology Research Center, Kermanshah University of Medical Sciences, Kermanshah, Iran</institution>
        </aff>
        <aff id="aff4">
          <institution>Department of Internal Medicine, Taleghani Hospital, Kermanshah University of Medical Sciences, Kermanshah, Iran</institution>
        </aff>
        <aff id="aff5">
          <institution>Department of Nursing, Borujerd Branch, Islamic Azad University, Borujerd, Iran</institution>
        </aff>
      </contrib-group>
      <author-notes>
        <corresp id="cor1"><label>*</label>For correspondence: <email>sadeghi_mkn@yahoo.com</email></corresp>
        <fn fn-type="con" id="equal-contrib">
          <label>*</label>
          <p>These authors contributed equally to this work</p>
        </fn>
      </author-notes>
      <pub-date date-type="pub" publication-format="electronic">
        <day>16</day>
        <month>10</month>
        <year>2017</year>
      </pub-date>
      <volume>4</volume>
      <issue>10</issue>
      <fpage>1</fpage>
      <lpage>6</lpage>
      <history>
        <date date-type="received">
          <day>07</day>
          <month>09</month>
          <year>2017</year>
        </date>
        <date date-type="accepted">
          <day>02</day>
          <month>10</month>
          <year>2017</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>Copyright: &#169; The Author(s) 2017</copyright-statement>
        <copyright-year>2017</copyright-year>
        <license license-type="open-access" xlink:href="http://creativecommons.org/licenses/CC-BY/4.0">
          <license-p>This article is published with open access by BioMedPress (BMP), Laboratory of Stem Cell Research and Application, Vietnam National University, Ho Chi Minh city, Vietnam This article is distributed under the terms of the Creative Commons Attribution License (CC-BY 4.0) which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.</license-p>
        </license>
      </permissions>
      <self-uri content-type="pdf" xlink:href="http://www.bmrat.org/index.php/BMRAT/article/view/374/766"/>
      <abstract>
        <p>Colorectal cancer (CRC) is one of the most common cancers in the World that KRAS mutations are considered as a key step in the progression of CRC. This meta-analysis study aimed to evaluate the prevalence of KRAS mutations in CRC patients in Iran. Six online databases including PubMed, Science direct, Scopus, Web of science, Cochran Library, and Scientific Information Database (SID) were searched systematically up to January 2017. A random-effects meta-analysis was used to calculate the estimation of the prevalence of KRAS mutations in CRC patients by the event rate (ER) with 95% confidence interval (95%CI). Out of 82 articles identified from the search, eleven studies included and analyzed for meta-analysis study. The studies included 1814 CRC patients that mean age of the patients was 57.5 years. The pooled ER of the studies for estimation  of  the  prevalence  of  KRAS  mutation  in  CRC  patients  was  32.8% (95%CI=28.7-37.3%). The pooled ER of the studies for the prevalence of codon 12 mutation  was  72.5%  (95%CI=59.8-82.3%)  and  for  codon  13  mutation  was  20% (95%CI=14.6-26.7%). The results showed that the prevalence of KRAS mutation in Iran was different with more studies that therefore the geographical area and race can impact on the prevalence of KRAS mutation in CRC patients. Also, codon 12 had the most prevalence among mutant codons, followed by codon 13 that Gly to Asp and Gly to Val were the most mutations in codon 12.</p>
      </abstract>
      <kwd-group>
        <kwd>CRC</kwd>
        <kwd>Iran</kwd>
        <kwd>KRAS</kwd>
        <kwd>prevalence</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="s1">
      <title>Introduction</title>
      <p>Colorectal cancer (CRC) is the fourth most common cancer in men and the third most common in women <xref ref-type="bibr" rid="ref1">Amirifard et al., 2016</xref>. There are very few studies about KRAS mutations in CRC from developing countries such as Iran <xref ref-type="bibr" rid="ref2">Bishehsari et al., 2006</xref>. The latest data from the cancer patients&#8217; registry program showed that the age-standardized incidence rate had risen from 2.8 to 5.5 in 2009 and reached 9.2 in 2012 per 100,000 persons <xref ref-type="bibr" rid="ref7">Dolatkhah et al., 2016</xref>. KRAS is a proto-oncogene located on the short arm of chromosome 12, encodes the protein KRAS, a GTPase involved in cell division, differentiation and apoptosis <xref ref-type="bibr" rid="ref6">Dobre et al., 2015</xref>. The prevalence of KRAS mutation in CRC patients is 35&#8211;40 %, and the majority of these mutations occur in codon 12 and less frequently in codon 13 of KRAS gene <xref ref-type="bibr" rid="ref16">Rosty et al., 2013</xref>. Mutations activating the KRAS proto-oncogene are considered a key step in the progression from normal colorectal epithelium to carcinoma <xref ref-type="bibr" rid="ref9">Fearon and Vogelstein, 1990</xref>. Roughly 90% of the activating mutations, that are influential solitary amino acid replacement in the GTPase pocket that guide to a block of the activity of KRAS p21 protein, are recognized in codons 12 (GGT) and 13 (GGC) of exon 1 and almost 5% in codon 61 (CAA) situated in exon 2. The most regularly found kinds of mutations are G&gt;A and G&gt;T transitions <xref ref-type="bibr" rid="ref14">Palmirotta et al., 2009</xref>. This meta-analysis study aimed to indicate the prevalence of KRAS mutations in CRC patients in Iran.</p>
    </sec>
    <sec id="s2">
      <title>Materials and Methods</title>
      <sec id="s2-1">
        <title>Search Strategy</title>
        <p>Six online databases including PubMed, Science direct, Scopus, Web of science, Cochran Library, and Scientific Information Database (SID) were searched systematically up to January 2017 with the terms of &#8220;KRAS&#8221; or &#8220;K-ras&#8221; and &#8220;colorectal&#8221; or &#8220;colon&#8221; or &#8220;rectum&#8221; or &#8220;rectal&#8221; in combination with &#8220;Iran&#8221;.</p>
      </sec>
      <sec id="s2-2">
        <title>Study selection</title>
        <p>One author (E.S) searched the articles and then the second author (M.S) blinded to the first author that if there was any disagreement between two authors, both resolved the problems with two-way conversation. The third author (M.P) did the final revision. The studies were searched for the assessment of prevalence of the KRAS mutations in CRC patients in English abstract.</p>
      </sec>
      <sec id="s2-3">
        <title>Data Extraction</title>
        <p>Name of the first author, year of publication, Province of the region, number of CRC patients, number of mutations, percentage of male (%), the mean age, number of mutant codons, and number of mutant amino acids of codon 12 were the relevant data extracted from every study.</p>
      </sec>
      <sec id="s2-4">
        <title>Statistical analysis</title>
        <p>A random-effects meta-analysis was used by Comprehensive Meta-Analysis software version 2.0 (CMA 2.0). The event rate (ER) with 95% confidence interval (95%CI) was calculated for estimation of the prevalence of KRAS mutations in CRC patients. Heterogeneity between estimates was assessed by the Q and I<sup>2</sup> statistic that for the Q statistic, heterogeneity was considered for P&lt;0.1. P-value (2-sided) &lt;0.05 was considered to be statistically significant in this meta-analysis study. Also, publication bias was assessed through funnel plot analysis with the Begg&#8217;s and Egger&#8217;s tests.</p>
      </sec>
    </sec>
    <sec id="s3">
      <title>Results</title>
      <p>From the initial 82 articles identified from the search, after excluding the studies, 18 studies were assessed for eligibility. Then, seven studies were excluded based on reasons. At last, eleven studies included and analyzed for meta-analysis study (<xref ref-type="fig" rid="fig1"> Figure 1 </xref>).</p>
      <fig id="fig1">
        <label>Figure 1</label>
        <caption>
          <p>Flowchart of the study.</p>
        </caption>
        <graphic xlink:href="bmrat.v4i10.374/fig1.png"/>
      </fig>
      <p>The characteristics of the studies included in the meta-analysis are shown in <xref ref-type="fig" rid="tab1"> Table 1 </xref>. All studies are case-control studies published between 2006 and 2016. Six studies were studied from Tehran (Central of Iran) <xref ref-type="bibr" rid="ref2">Bishehsari et al., 2006</xref><xref ref-type="bibr" rid="ref17">Roudbari et al., 2016</xref><xref ref-type="bibr" rid="ref19">Shemirani et al., 2011</xref><xref ref-type="bibr" rid="ref20">Sobhani et al., 2010</xref><xref ref-type="bibr" rid="ref22">Tameshkel et al., 2016</xref><xref ref-type="bibr" rid="ref23">Vakil et al., 2016</xref>, one study from Shiraz (Southwest of Iran) <xref ref-type="bibr" rid="ref12">Omidifar et al., 2015</xref>, two studies from Kermanshah (Western of Iran) <xref ref-type="bibr" rid="ref1">Amirifard  et  al.,  2016</xref><xref ref-type="bibr" rid="ref15">Payandeh  et  al.,  2016</xref>,  one  study  from  Tabriz (Northwestern of Iran) <xref ref-type="bibr" rid="ref7">Dolatkhah et al., 2016</xref>, and one study from South Khorasan (Eastern of Iran) <xref ref-type="bibr" rid="ref11">Naseri et al., 2016</xref>. All studies included 1814 CRC patients that mean age of the patients was 57.5 years. In more studies, the prevalence of CRC in males was more than females <xref ref-type="bibr" rid="ref1">Amirifard et al., 2016</xref><xref ref-type="bibr" rid="ref2">Bishehsari et al., 2006</xref><xref ref-type="bibr" rid="ref7">Dolatkhah et al., 2016</xref><xref ref-type="bibr" rid="ref11">Naseri et al., 2016</xref><xref ref-type="bibr" rid="ref12">Omidifar et al., 2015</xref><xref ref-type="bibr" rid="ref15">Payandeh et al., 2016</xref><xref ref-type="bibr" rid="ref17">Roudbari et al., 2016</xref><xref ref-type="bibr" rid="ref19">Shemirani et al., 2011</xref><xref ref-type="bibr" rid="ref22">Tameshkel et al., 2016</xref><xref ref-type="bibr" rid="ref23">Vakil et al., 2016</xref>. Number of mutations in codon 12 and 13 and also mutant amino acid in codon 12 has been shown in <xref ref-type="fig" rid="tab1"> Table 1 </xref> that Gly is normal amino acid in codon 12 and can change to other amino acids.</p>
      <sec id="s3-1">
        <title>KRAS mutation</title>
        <p>The prevalence of KRAS mutation in CRC patients has been reported in <xref ref-type="fig" rid="fig2"> Figure 2 </xref> by the ER. The pooled ER of the studies was 32.8% (95%CI=28.7-37.3%) with I2=58.26% (P=0.008).</p>
        <fig id="fig2">
          <label>Figure 2</label>
          <caption>
            <p>Forest plot of the prevalence of KRAS mutation in colorectal cancer patients</p>
          </caption>
          <graphic xlink:href="bmrat.v4i10.374/fig2.png"/>
        </fig>
      </sec>
      <sec id="s3-2">
        <title>Mutant codons</title>
        <p><xref ref-type="fig" rid="fig3"> Figure 3 </xref> shows the prevalence of mutant codons among all KRAS mutations.</p>
        <fig id="fig3">
          <label>Figure 3</label>
          <caption>
            <p>Forest plot of the prevalence of KRAS mutant codons in colorectal cancer patients</p>
          </caption>
          <graphic xlink:href="bmrat.v4i10.374/fig3.png"/>
        </fig>
        <p>The pooled ER of the studies for codon 12 was 72.5% (95%CI=59.8-82.3%) with I2=83.3% (P&lt;0.001) and for codon 13 was 20% (95%CI=14.6-26.7%) with I2=54.74% (P=0.015).</p>
      </sec>
      <sec id="s3-3">
        <title>Mutant amino acids of codon 12</title>
        <p><xref ref-type="fig" rid="fig4"> Figure 4 </xref> shows the prevalence of mutant amino acids among KRAS mutations in codon 12. The pooled ER of the studies for "Asp" was 48% (95%CI=41.9-54.2%), "Val" was 30.9% (95%CI=25.3-37.1%), "Ala" was 8.6% (95%CI=2.5-25.6%), "Cys" was 9.9% (95%CI=6-15.9%), and "Ser" was 9.2% (95%CI=6.3-13.2%).</p>
        <fig id="fig4">
          <label>Figure 4</label>
          <caption>
            <p>Forest plot of the prevalence of mutant amino acids of codon 12 of KRAS mutation in colorectal cancer patients</p>
          </caption>
          <graphic xlink:href="bmrat.v4i10.374/fig4.png"/>
        </fig>
      </sec>
      <sec id="s3-4">
        <title>Publication bias</title>
        <p>Funnel plot of random effect of the studies for the prevalence of KRAS mutation in CRC patients has been shown in <xref ref-type="fig" rid="fig5"> Figure 5 </xref>. The Begg&#8217;s and Egger&#8217;s tests didn&#8217;t show publication bias (P=0.102 and P=0.433, respectively).</p>
        <fig id="fig5">
          <label>Figure 5</label>
          <caption>
            <p>Funnel plot of random effect of the studies for the prevalence of KRAS mutation in colorectal cancer patients.</p>
          </caption>
          <graphic xlink:href="bmrat.v4i10.374/fig5.png"/>
        </fig>
      </sec>
      <fig id="tab1">
        <label>Table 1</label>
        <caption>
          <p>Characteristics of the studies included in the meta-analysis</p>
        </caption>
        <graphic xlink:href="bmrat.v4i10.374/tab1.png"/>
      </fig>
    </sec>
    <sec id="s4">
      <title>Limitations</title>
      <p>More studies were not sex-matched.</p>
      <p>Some studies reported the prevalence just in metastatic CRC and rest of studies both metastatic and non-metastatic CRC.</p>
      <p>The studies reported in different areas and races of Iran that geographical area and race can effect on the prevalence of mutations.</p>
      <p>In a number of studies, except for codon 12 and 13, types of other different codons have been checked.</p>
    </sec>
    <sec id="s5">
      <title>Conclusion</title>
      <p>The meta-analysis showed that the prevalence of KRAS mutation in Iran was different with more studies that therefore the geographical area and race can impact on the prevalence of KRAS mutation in CRC patients. Also, Codon 12 had the most prevalence among mutant codons, followed by codon 13. At last, Gly to Asp and Gly to Val were the most mutations in codon 12.</p>
    </sec>
    <sec id="s6">
      <title>Abbreviations</title>
      <p>CI: Confidence Interval</p>
      <p>CRC: Colorectal Cancer</p>
      <p>ER: Event Rate</p>
      <p>SID: Scientific Information Database</p>
    </sec>
    <sec id="s7">
      <title>Author Contributions</title>
      <p>Conceptualization: MP ES MS</p>
      <p>Data curation: ES MS</p>
      <p>Formal analysis: ES MS</p>
      <p>Funding acquisition: ES MS</p>
      <p>Investigation: NA BS NF</p>
      <p>Methodology: ES MS</p>
      <p>Project administration: MP NA BS NF</p>
      <p>Resources: MP MD</p>
      <p>Software: ES MS</p>
      <p>Supervision: MP NA</p>
      <p>Validation: MP ES MS</p>
      <p>Visualization: NA BS NF</p>
      <p>Writing &#8211; original draft: ES MS</p>
      <p>Writing &#8211; review &amp; editing: MP NA MS BS NF ES MD</p>
    </sec>
  </body>
  <back>
    <ack id="ack">
      <title>Acknowledgements</title>
      <p>This article is a part of the research project (code: 95471) supported by a grant from Research Council of Kermanshah University of Medical Sciences.</p>
    </ack>
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